MARA results: cerebellum, embryo E17, biol

Sample name: cerebellum, embryo E17, biol_rep3 (E17R3)

Sorted Z-values histogram for the sample cerebellum, embryo E17, biol_rep3 (E17R3)

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
RFX1..5_RFXANK_RFXAP.p2	4.548	Rfx1 Rfxap Rfx5 Rfxank Rfx4 Rfx3 Rfx2
REST.p3	4.137	Rest
AHR_ARNT_ARNT2.p2	3.717	Arnt Ahr Arnt2
ZNF148.p2	3.299	Zfp148
UAUUGCU	3.112
MYFfamily.p2	2.731	Myod1 Myf6 Myf5 Myog
HOX{A6,A7,B6,B7}.p2	2.607	Hoxb6 Hoxa7 Hoxb7 Hoxa6
UGUGCUU	2.590
DBP.p2	2.305	Dbp
SNAI1..3.p2	2.112	Snai2 Snai1 Snai3
TBX4,5.p2	1.942	Tbx5 Tbx4
ESRRA.p2	1.901	Esrra
ETS1,2.p2	1.858	Ets2 Ets1
ZEB1.p2	1.790	Zeb1
ZBTB6.p2	1.733	Zbtb6
NR5A1,2.p2	1.708	Nr5a1 Nr5a2
EGR1..3.p2	1.697	Egr3 Egr1 Egr2
GGCAGUG	1.637
GFI1B.p2	1.630	Gfi1b
NFE2L2.p2	1.608	Nfe2l2
PRRX1,2.p2	1.446	Prrx2 Prrx1
RREB1.p2	1.408	Rreb1
TCF4_dimer.p2	1.403	Tcf4
EBF1.p2	1.370	Ebf1
LMO2.p2	1.361	Lmo2
TP53.p2	1.355	Trp53
ATF5_CREB3.p2	1.288	Atf5 Creb3
NHLH1,2.p2	1.261	Nhlh1 Nhlh2
CAGCAGG	1.253
NFIX.p2	1.242	Nfix
T.p2	1.172	T
TBP.p2	1.142	Tbp
POU5F1.p2	1.136	Pou5f1
PAX2.p2	1.134	Pax2
SMAD1..7,9.p2	1.113	Smad5 Smad1 Smad3 Smad4 Smad2 Smad6 Smad7 Smad9
GAUUGUC	1.100
FOXL1.p2	1.013	Foxl1
ZIC1..3.p2	1.008	Zic1 Zic2 Zic3
GCUGGUG	0.950
ATF2.p2	0.948	Atf2
GLI1..3.p2	0.931	Gli1 Gli2 Gli3
IKZF2.p2	0.898	Ikzf2
EWSR1-FLI1.p2	0.896	Fli1 Ewsr1
PAX4.p2	0.875	Pax4
AUUGCAC	0.869
GAGAUGA	0.827
CRX.p2	0.822	Crx
AAAGUGC	0.804
ATF6.p2	0.781	Atf6
GAGAACU	0.776
EVI1.p2	0.774	Mecom
POU6F1.p2	0.771	Pou6f1
KLF12.p2	0.715	Klf12
ESR1.p2	0.706	Esr1
AAUACUG	0.683
ACCCUGU	0.657
ZNF423.p2	0.647	Zfp423
RXRA_VDR{dimer}.p2	0.633	Vdr	$logo of RXRA_VDR{dimer}.p2$
NR6A1.p2	0.630	Nr6a1
GUGCAAA	0.622
MZF1.p2	0.600	Mzf1
SRY.p2	0.599	Sry
POU3F1..4.p2	0.599	Pou3f1 Pou3f3 Pou3f2 Pou3f4
NFE2L1.p2	0.588	Nfe2l1
UAAGACG	0.569
GAUCAGA	0.563
NFE2.p2	0.556	Nfe2
RORA.p2	0.543	Rora
FOXN1.p2	0.506	Foxn1
NANOG{mouse}.p2	0.484	Nanog
HLF.p2	0.477	Hlf
UUGUUCG	0.470
GGAAGAC	0.466
bHLH_family.p2	0.462	Arntl Mitf Mxi1 Tcfe3 Clock Olig2 Mxd4 Hey2 Hey1 Heyl Mlxipl Hes6 Mxd3 Arntl2 Id1 Mnt Olig1 Npas2
POU1F1.p2	0.460	Pou1f1
CUACAGU	0.450
NKX2-1,4.p2	0.442	Nkx2-1 Nkx2-4
FOXO1,3,4.p2	0.440	Foxo1 Foxo4 Foxo3
FOX{F1,F2,J1}.p2	0.434	Foxf2 Foxj1 Foxf1a
HOXA9_MEIS1.p2	0.388	Meis1 Hoxa9
HOX{A4,D4}.p2	0.382	Hoxa4 Hoxd4
ACAGUAC	0.372
CGUGUCU	0.371
ARID5B.p2	0.356	Arid5b
RXR{A,B,G}.p2	0.352	Rxra Rxrb Rxrg
HMX1.p2	0.346	Hmx1
UGCAUUG	0.316
AIRE.p2	0.315	Aire
FOXD3.p2	0.305	Foxd3
AACGGAA	0.292
FOX{I1,J2}.p2	0.291	Foxi1 Foxj2
MYOD1.p2	0.280	Myod1
ZBTB16.p2	0.271	Zbtb16
ZFP161.p2	0.267	Zfp161
SOX5.p2	0.252	Sox5
AGCAGCA	0.249
GGCAAGA	0.226
SREBF1,2.p2	0.221	Srebf1 Srebf2
FOX{D1,D2}.p2	0.220	Foxd2 Foxd1
GAUAUGU	0.214
NKX3-1.p2	0.204	Nkx3-1
TAL1_TCF{3,4,12}.p2	0.190	Tcf3 Tcf4 Tal1 Tcf12	$logo of TAL1_TCF{3,4,12}.p2$
UAAGACU	0.174
AACAGUC	0.170
CUCCCAA	0.164
GZF1.p2	0.137	Gzf1
NFKB1_REL_RELA.p2	0.134	Rela Rel Nfkb1
KLF4.p3	0.124	Klf4
EN1,2.p2	0.114	En1 En2
IKZF1.p2	0.109	Ikzf1
HMGA1,2.p2	0.096	Hmga1 Hmga2
ACUGCAU	0.095
AAUCUCU	0.094
AAGUGCU	0.089
AR.p2	0.084	Ar
UGACCUA	0.073
AACCUGG	0.064
UGAAAUG	0.061
CCAGCAU	0.059
PAX6.p2	0.049	Pax6
HES1.p2	0.049	Hes1
HOX{A5,B5}.p2	0.038	Hoxb5 Hoxa5
JUN.p2	0.022	Jun Jund Junb
PAX3,7.p2	0.019	Pax7 Pax3
GUAAACA	0.014
STAT1,3.p3	0.011	Stat1 Stat3
ACCCGUA	0.009
RXRG_dimer.p3	0.009	Nr1h2 Rxra Pparg Ppara Rxrb Rxrg
GGAGUGU	0.004
CGUACCG	-0.000
PAX8.p2	-0.012	Pax8
SP1.p2	-0.016	Sp1
AUGACAC	-0.020
UGUGCGU	-0.028
ACUGGCC	-0.034
NKX2-2,8.p2	-0.035	Nkx2-2 Nkx2-9
FOSL2.p2	-0.038	Fosl2
GCUACAU	-0.047
AACCGUU	-0.049
UUGGCAA	-0.049
GTF2I.p2	-0.051	Gtf2i
SRF.p3	-0.058	Srf
AAUCUCA	-0.061
VSX1,2.p2	-0.067	Vsx2 Vsx1
GGACGGA	-0.069
MYBL2.p2	-0.086	Mybl2
PDX1.p2	-0.098	Pdx1
UCACAUU	-0.099
DMAP1_NCOR{1,2}_SMARC.p2	-0.099	Smarca1 Smarcc2 Smarca5 Ncor1 Ncor2 Dmap1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
UGCAUAG	-0.107
GGAAUGU	-0.111
LHX3,4.p2	-0.112	Lhx3 Lhx4
UUGGCAC	-0.115
HSF1,2.p2	-0.117	Hsf1 Hsf2
PATZ1.p2	-0.125	Patz1
FOXP3.p2	-0.159	Foxp3
UAAUGCU	-0.167
TFAP2{A,C}.p2	-0.180	Tcfap2c Tcfap2a
EOMES.p2	-0.182	Eomes
CUX2.p2	-0.190	Cux2
IRF1,2,7.p3	-0.195	Irf1 Irf2 Irf7
CEBPA,B_DDIT3.p2	-0.208	Ddit3 Cebpa Cebpb
PBX1.p2	-0.215	Pbx1
FOX{C1,C2}.p2	-0.217	Foxc1 Foxc2
AUGGCUU	-0.221
MSX1,2.p2	-0.223	Msx1 Msx2
ONECUT1,2.p2	-0.248	Onecut2 Onecut1
AAGGUGC	-0.253
GTF2A1,2.p2	-0.259	Gtf2a1 Gtf2a2
STAT5{A,B}.p2	-0.259	Stat5b Stat5a
RUNX1..3.p2	-0.264	Runx1 Runx3 Runx2
AGUGGUU	-0.278
AGCAGCG	-0.281
TFAP4.p2	-0.300	Tcfap4
PPARG.p2	-0.303	Pparg
UCACAGU	-0.316
AGCUGCC	-0.322
NRF1.p2	-0.327	Nrf1
GCAGCAU	-0.341
ACAUUCA	-0.342
ACAGUAU	-0.370
HNF1A.p2	-0.378	Hnf1a
FOS_FOS{B,L1}_JUN{B,D}.p2	-0.380	Fos Junb Fosl1 Jund Fosb	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
HAND1,2.p2	-0.385	Hand1 Hand2
LEF1_TCF7_TCF7L1,2.p2	-0.387	Tcf7 Tcf7l2 Lef1 Tcf7l1
AAUGCCC	-0.399
HIF1A.p2	-0.411	Hif1a
CCAGUGU	-0.436
ALX1.p2	-0.438	Alx1
CDC5L.p2	-0.438	Cdc5l
AACACUG	-0.441
TGIF1.p2	-0.460	Tgif1
CCUUCAU	-0.472
GGCUCAG	-0.482
CAGUGCA	-0.505
CUUUGGU	-0.532
AGGUAGU	-0.544
NKX3-2.p2	-0.558	Nkx3-2
SOX17.p2	-0.570	Sox17
SPI1.p2	-0.570	Sfpi1
POU5F1_SOX2{dimer}.p2	-0.570	Pou5f1 Sox2	$logo of POU5F1_SOX2{dimer}.p2$
PRDM1.p3	-0.585	Prdm1
AGCUUAU	-0.591
FOXQ1.p2	-0.621	Foxq1
MEF2{A,B,C,D}.p2	-0.624	Mef2a Mef2c Mef2d Mef2b
AGUGCAA	-0.628
UUUUUGC	-0.647
UCCCUUU	-0.653
NKX2-3_NKX2-5.p2	-0.665	Nkx2-5 Nkx2-3
NANOG.p2	-0.668	Nanog
MTF1.p2	-0.672	Mtf1
UCAAGUA	-0.715
UCCAGUU	-0.719
NKX6-1,2.p2	-0.732	Nkx6-1 Nkx6-2
GUAACAG	-0.741
TFCP2.p2	-0.756	Tcfcp2
CTCF.p2	-0.782	Ctcf
AGCACCA	-0.856
RBPJ.p2	-0.866	Rbpj
ZNF384.p2	-0.894	Zfp384
CACAGUG	-0.919
NR3C1.p2	-0.934	Nr3c1
MAFB.p2	-0.979	Mafb
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	-1.001	Arnt Max Myc Usf1 Bhlhe40 Arnt2
AUGGCAC	-1.006
ZNF143.p2	-1.022	Zfp143
GATA1..3.p2	-1.026	Gata1 Gata2 Gata3
UUGGUCC	-1.033
ADNP_IRX_SIX_ZHX.p2	-1.074	Six5 Zhx1 Irx4 Adnp Zhx3 Zhx2 Irx5 Six2
SPIB.p2	-1.095	Spib
BACH2.p2	-1.114	Bach2
SOX{8,9,10}.p2	-1.135	Sox9 Sox8 Sox10
GUCAGUU	-1.167
NFATC1..3.p2	-1.189	Nfatc3 Nfatc2 Nfatc1
SOX2.p2	-1.192	Sox2
HBP1_HMGB_SSRP1_UBTF.p2	-1.221	Hmgb2 Hmgb3 Ssrp1 Ubtf Hbp1
FOXA2.p3	-1.231	Foxa2
TLX1..3_NFIC{dimer}.p2	-1.234	Tlx1 Tlx3	$logo of TLX1..3_NFIC{dimer}.p2$
GATA6.p2	-1.235	Gata6
ATF4.p2	-1.294	Atf4
EP300.p2	-1.298	Ep300
PITX1..3.p2	-1.375	Pitx2 Pitx3 Pitx1
SPZ1.p2	-1.394	Spz1
ZNF238.p2	-1.422	Zfp238
FEV.p2	-1.440	Fev
XBP1.p3	-1.461	Xbp1
NR1H4.p2	-1.464	Nr1h4
CDX1,2,4.p2	-1.501	Cdx1 Cdx2 Cdx4
GAGGUAG	-1.545
POU2F1..3.p2	-1.683	Pou2f2 Pou2f1 Pou2f3
TFEB.p2	-1.693	Tcfeb
STAT2,4,6.p2	-1.794	Stat2 Stat4 Stat6
GUAGUGU	-1.837
HIC1.p2	-1.891	Hic1
MYB.p2	-1.907	Myb
AAGGCAC	-1.942
MAZ.p2	-1.954	Maz
NFIL3.p2	-2.014	Nfil3
PAX5.p2	-2.183	Pax5
TLX2.p2	-2.242	Tlx2
EHF.p2	-2.275	Ehf
NFY{A,B,C}.p2	-2.280	Nfyc Nfyb Nfya
BPTF.p2	-2.342	Bptf
E2F1..5.p2	-2.381	E2f4 E2f5 E2f2 E2f1 E2f3
TFDP1.p2	-2.438	Tfdp1
CCCUGAG	-2.809
HNF4A_NR2F1,2.p2	-2.842	Nr2f1 Nr2f2 Hnf4a
ELF1,2,4.p2	-2.859	Elf2 Elf1 Elf4
TFAP2B.p2	-2.951	Tcfap2b
GFI1.p2	-3.047	Gfi1
CREB1.p2	-3.073	Creb1
TEAD1.p2	-3.145	Tead1 Tead2 Tead3 Tead4
ELK1,4_GABP{A,B1}.p3	-3.548	Gabpa Gabpb1 Elk4 Elk1	$logo of ELK1,4_GABP{A,B1}.p3$
YY1.p2	-3.799	Yy1

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Sample name: cerebellum, embryo E17, biol_rep3 (E17R3)

Sorted z-values for every WM.